Consensus

Consensus Server

Alignment of a sequence (target) to its closest homolog in PDB (template) using a consensus
of other alignment methods and prediction of structurally similar zones in the alignment.
Suggested Application: Comparative Modeling

Development stage: beta. Click here for documentation, bugs and other information.


Enter your target sequence (only one at a time) text here:
Note: Sequence must be either in pure FASTA format or plain sequence.

Or upload your target sequence file


Five lettered name or header for the target sequence:


(Optional) Template PDB code: and the chain identifier (leave blank if none):
Fill these two fields if you are reasonably sure that they are correct.

(Optional) Check here if you want five full models


Email address to send the results:

(Please be sure that your incoming email server is not going to block mail from apache@bu.edu)


        

Please cite:
 J.C. Prasad, S.R. Comeau, S. Vajda, and C.J. Camacho.
Consensus alignment for reliable framework prediction in homology modeling. Bioinformatics 2003 19: 1682-1691
Click here to download.

Please send feedback and comments to
or to the senior researcher in charge of this project Dr. Carlos Camacho

Structural Bioinformatics Laboratory. Boston University