Our Servers

Our lab maintains multiple servers to provide the community with tools for using our methods. If you would like additional information on any of the servers, please contact us, choosing the appropriate server under category.

Cluspro: A fully automated protein-protein docking and discrimination server
- Version 2: with PIPER[1]
- Version 1 [2]
FTMap: Protein mapping server using FTMap[3]
FTSite: Binding site prediction

References

Kozakov D, Brenke R, Comeau SR, Vajda S. 2006. PIPER: An FFT-based protein docking program with pairwise potentials. Proteins: Structure, Function, and Bioinformatics. 65(2):392-406.
Comeau SR, Gatchell DW, Vajda S, Camacho CJ. 2004. ClusPro: an automated docking and discrimination method for the prediction of protein complexes. Bioinformatics. 20(1):45-50.
Brenke R, Kozakov D, Chuang G-Y, Beglov D, Hall DR, Landon MR, Mattos C, Vajda S. 2009. Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques. Bioinformatics. 25(5):621-627.