Our lab maintains multiple servers to provide the community with tools for using our methods. If you would like additional information on any of the servers, please contact us, choosing the appropriate server under category.
- Cluspro: A fully automated protein-protein docking and discrimination server
- Version 1 [1]
- Version 2 Beta: with Piper[2]
- FTMap Beta: Protein mapping server using FTMap[3]
- PRECISE: PREdicted and Concensus Interaction Sites in Enzyme[4]
References
- Comeau, SR, Gatchell DW, Vajda S, Camacho CJ. 2004. ClusPro: an automated docking and discrimination method for the prediction of protein complexes. Bioinformatics. 20(1):45-50.
- Kozakov, D, Brenke R, Comeau SR, Vajda S. 2006. PIPER: An FFT-based protein docking program with pairwise potentials. Proteins: Structure, Function, and Bioinformatics. 65(2):392-406.
- Brenke, R, Kozakov D, Chuang G-Y, Beglov D, Hall D, Landon MR, Mattos C, Vajda S. 2009. Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques. Bioinformatics. 25(5):621-627.
- Landon, MR, David R. Lancia J., Clodfelter KH, Vajda S. 2006. Clustering of domains of functionally related enzymes in the interaction database PRECISE by the generation of primary sequence patterns. Journal of Molecular Graphics and Modelling. 24(6):426-433.