Papers+Conferences | Structural Bioinformatics Lab

Papers+Conferences

2006

Clodfelter KH, Waxman DJ, Vajda S. 2006. Computational Solvent Mapping Reveals the Importance of Local Conformational Changes for Broad Substrate Specificity in Mammalian Cytochromes P450. Biochemistry. 45(31):9393-9407. Download: PDF (1.07 MB)

Landon MR, Lancia, Jr. DR, Clodfelter KH, Vajda S. 2006. Clustering of domains of functionally related enzymes in the interaction database PRECISE by the generation of primary sequence patterns. Journal of Molecular Graphics and Modelling. 24(6):426-433. Download: PDF (768.35 KB)

2005

Kozakov D, Clodfelter KH, Vajda S, Camacho CJ. 2005. Optimal Clustering for Detecting Near-Native Conformations in Protein Docking. Biophysical Journal. 89(2):867-875. Download: PDF (326.16 KB)

Kozakov D, Clodfelter KH, Vajda S, Camacho CJ. 2005. Optimal Clustering for Detecting Near-Native Conformation in Protein Docking. CAPRI Meeting. Download: PPT (5.34 MB)

2004

Sheu S-H, Lancia, Jr. DR, Clodfelter KH, Landon MR, Vajda S. 2004. PRECISE: a Database of Predicted and Consensus Interaction Sites in Enzymes. Nucleic Acids Research. 33(Database):D206-D211. Download: PDF (673.78 KB)

2003

Silberstein M, Dennis S, Brown L, Kortvelyesi T, Clodfelter KH, Vajda S. 2003. Identification of Substrate Binding Sites in Enzymes by Computational Solvent Mapping. Journal of Molecular Biology. 332(5):1095-1113. Download: PDF (1.9 MB)