Papers+Conferences

2016
Mamonov AB, Moghadasi M, Mirzaei H, Zarbafian S, Grove LE, Bohnuud T, Vakili P, Paschalidis IC, Vajda S, Kozakov D.  2016.  Focused grid-based resampling for protein docking and mapping. Journal of Computational Chemistry. 37(11):961-970. Download: PDF (673.58 KB)
2015
Mirzaei H, Zarbafian S, Villar E, Mottarella S, Beglov D, Vajda S, Paschalidis IC, Vakili P, Kozakov D.  2015.  Energy Minimization on Manifolds for Docking Flexible Molecules. Journal of Chemical Theory and Computation. 11(3):1063-1076. Download: PDF (5.51 MB)
2014
Vakili P, Mirzaei H, Zarbafian S, Paschalidis IC, Kozakov D, Vajda S.  2014.  Optimization on the space of rigid and flexible motions: An alternative manifold optimization approach. 2014 IEEE 53rd Annual Conference on Decision and Control (CDC)53rd IEEE Conference on Decision and Control. :5825-5830. Download: PDF (473.3 KB)